Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs139251541 chr3:46719437 A/AT 0 169 22.8 17.1 2.4 KM Plot
UCEC rs139617008 chr3:47854398 G/A 7.73E-7 171 22.6 22.25 11.53 KM Plot
UCEC rs139806459 chr3:47810632 C/T 6.44E-6 174 22.63 20.13 11.53 KM Plot
UCEC rs1401912 chr4:57258290 T/C 0.000127 174 33.28 22.63 19.67 KM Plot
UCEC rs140368343 chr3:48070597 T/A 6.44E-6 174 22.63 20.13 11.53 KM Plot
UCEC rs140658888 chr7:20677994 ATAATT/A 9.52E-12 174 22.67 19.17 4.33 KM Plot
UCEC rs140719003 chr3:47943613 C/T 6.44E-6 174 22.63 20.13 11.53 KM Plot
UCEC rs141061319 chr14:75400613 AT/A 6.95E-5 166 22.67 18.33 1.67 KM Plot
UCEC rs141404397 chr7:64153218 GT/G 0 174 22.57 21.98 2.4 KM Plot
UCEC rs141648145 chr7:20643466 TA/T 0 172 22.7 20.13 4.33 KM Plot
UCEC rs141871752 chr5:54396077 C/T 2.22E-7 171 21.1 27.78 20.33 KM Plot
UCEC rs142577121 chr14:73502048 AAGAGAG/A 4.61E-7 174 22.57 27.05 10.33 KM Plot
UCEC rs142933927 chr22:46999395 C/T 1.23E-5 167 22.85 21.85 13.63 KM Plot
UCEC rs143026227 chr14:75365545 T/TA 5.31E-5 171 22.9 17.4 1.67 KM Plot
UCEC rs143278219 chr5:54394165 A/G 9.5E-10 172 21.08 28.03 18.47 KM Plot